Share this Article

Share |

View Metrics Here

Visit Altmetric.com

MAXIMUM ENTROPY AND THE STATE-VARIABLE APPROACH TO MACROECOLOGY

J. Harte1,3, T. Zillio2, E. Conlisk1, and A. B. Smith1

1 Energy and Resources Group, University of California, 310 Barrows Hall, Berkeley, California 94720 USA

2 Department of Renewable Resources, University of Alberta, 114th Street 89 Avenue, Edmonton, Alberta T6G 2H1 Canada

The biodiversity scaling metrics widely studied in macroecology include the species–area relationship (SAR), the scale-dependent species–abundance distribution (SAD), the distribution of masses or metabolic energies of individuals within and across species, the abundance–energy or abundance–mass relationship across species, and the species-level occupancy distributions across space. We propose a theoretical framework for predicting the scaling forms of these and other metrics based on the state-variable concept and an analytical method derived from information theory. In statistical physics, a method of inference based on information entropy results in a complete macro-scale description of classical thermodynamic systems in terms of the state variables volume, temperature, and number of molecules. In analogy, we take the state variables of an ecosystem to be its total area, the total number of species within any specified taxonomic group in that area, the total number of individuals across those species, and the summed metabolic energy rate for all those individuals. In terms solely of ratios of those state variables, and without invoking any specific ecological mechanisms, we show that realistic functional forms for the macroecological metrics listed above are inferred based on information entropy. The Fisher log series SAD emerges naturally from the theory. The SAR is predicted to have negative curvature on a log–log plot, but as the ratio of the number of species to the number of individuals decreases, the SAR becomes better and better approximated by a power law, with the predicted slope z in the range of 0.14–0.20. Using the 3/4 power mass–metabolism scaling relation to relate energy requirements and measured body sizes, the Damuth scaling rule relating mass and abundance is also predicted by the theory. We argue that the predicted forms of the macroecological metrics are in reasonable agreement with the patterns observed from plant census data across habitats and spatial scales. While this is encouraging, given the absence of adjustable fitting parameters in the theory, we further argue that even small discrepancies between data and predictions can help identify ecological mechanisms that influence macroecological patterns.

Received: August 23, 2007; Received: January 21, 2008; Accepted: February 21, 2008

Cited by

María Natalia Umaña, Caicai Zhang, Min Cao, Luxiang Lin, Nathan G. Swenson. (2015) Commonness, rarity, and intraspecific variation in traits and performance in tropical tree seedlings. Ecology Letters 18:10.1111/ele.2015.18.issue-12, 1329-1337.
Online publication date: 1-Dec-2015.
CrossRef
Wubing Xu, Guoke Chen, Canran Liu, Keping Ma. (2015) Latitudinal differences in species abundance distributions, rather than spatial aggregation, explain beta-diversity along latitudinal gradients. Global Ecology and Biogeography 24:10.1111/geb.2015.24.issue-10, 1170-1180.
Online publication date: 1-Oct-2015.
CrossRef
Sarah Cunze, Oliver Tackenberg. (2015) Decomposition of the maximum entropy niche function – A step beyond modelling species distribution. Environmental Modelling & Software 72, 250-260.
Online publication date: 1-Oct-2015.
CrossRef
John Harte, Andrew Rominger, Wenyu Zhang. (2015) Integrating macroecological metrics and community taxonomic structure. Ecology Letters 18:10.1111/ele.2015.18.issue-10, 1068-1077.
Online publication date: 1-Oct-2015.
CrossRef
Karel Mokany, Simon Ferrier, Sean R. Connolly, Piers K. Dunstan, Elizabeth A. Fulton, Michael B. Harfoot, Thomas D. Harwood, Anthony J. Richardson, Stephen H. Roxburgh, Jörn P. W. Scharlemann, Derek P. Tittensor, David A. Westcott, Brendan A. Wintle. (2015) Integrating modelling of biodiversity composition and ecosystem function. Oikos, n/a-n/a.
Online publication date: 1-Oct-2015.
CrossRef
Justin Kitzes, John Harte. (2015) Predicting extinction debt from community patterns. Ecology 96:8, 2127-2136.
Online publication date: 1-Aug-201523-Jul-2015.
Abstract . Full Text . PDF (311 KB) 
Justin Kitzes, Rebekah Shirley. (2015) Estimating biodiversity impacts without field surveys: A case study in northern Borneo. Ambio.
Online publication date: 14-Jul-2015.
CrossRef
Wai-Tat Fu, Thomas Hills, Peter M. Todd. (2015) Interfacing Mind and Environment: The Central Role of Search in Cognition. Topics in Cognitive Science 7:10.1111/tops.2015.7.issue-3, 384-390.
Online publication date: 1-Jul-2015.
CrossRef
D. J. McGlinn, X. Xiao, J. Kitzes, E. P. White. (2015) Exploring the spatially explicit predictions of the Maximum Entropy Theory of Ecology. Global Ecology and Biogeography 24:10.1111/geb.2015.24.issue-6, 675-684.
Online publication date: 1-Jun-2015.
CrossRef
R. P. Mann, R. Garnett. (2015) The entropic basis of collective behaviour. Journal of The Royal Society Interface 12, 20150037-20150037.
Online publication date: 1-Apr-2015.
CrossRef
J. Bertram, R. C. Dewar. (2015) Combining mechanism and drift in community ecology: a novel statistical mechanics approach. Theoretical Ecology.
Online publication date: 6-Mar-2015.
CrossRef
Sandro Azaele, Amos Maritan, Stephen J. Cornell, Samir Suweis, Jayanth R. Banavar, Doreen Gabriel, William E. Kunin. (2015) Towards a unified descriptive theory for spatial ecology: predicting biodiversity patterns across spatial scales. Methods in Ecology and Evolution 6:10.1111/mee3.2015.6.issue-3, 324-332.
Online publication date: 1-Mar-2015.
CrossRef
Shun Adachi. (2015) Eastern Japanese Dictyostelia Species Adapt While Populations Exhibit Neutrality. Evolutionary Biology.
Online publication date: 27-Feb-2015.
CrossRef
Jairo Patiño, Patrick Weigelt, François Guilhaumon, Holger Kreft, Kostas A. Triantis, Agustín Naranjo-Cigala, Péter Sólymos, Alain Vanderpoorten. (2014) Differences in species-area relationships among the major lineages of land plants: a macroecological perspective. Global Ecology and Biogeography 23:10.1111/geb.2014.23.issue-11, 1275-1283.
Online publication date: 1-Nov-2014.
CrossRef
Erica A. Newman, Mary Ellen Harte, Natalie Lowell, Mark Wilber, John Harte. (2014) Empirical tests of within- and across-species energetics in a diverse plant community. Ecology 95:10, 2815-2825.
Online publication date: 1-Oct-201421-Oct-2014.
Abstract . Full Text . PDF (1908 KB) 
P. A. Marquet, A. P. Allen, J. H. Brown, J. A. Dunne, B. J. Enquist, J. F. Gillooly, P. A. Gowaty, J. L. Green, J. Harte, S. P. Hubbell, J. O'Dwyer, J. G. Okie, A. Ostling, M. Ritchie, D. Storch, G. B. West. (2014) On Theory in Ecology. BioScience 64, 701-710.
Online publication date: 1-Aug-2014.
CrossRef
John Harte, Erica A. Newman. (2014) Maximum information entropy: a foundation for ecological theory. Trends in Ecology & Evolution 29, 384-389.
Online publication date: 1-Jul-2014.
CrossRef
Javier Segovia. (2014) Statistical Thermodynamics Concepts and Mathematical Tools for a Multi-Agent Ecosystem. Artificial Life 20, 237-270.
Online publication date: 1-Apr-2014.
CrossRef
Justin Kitzes, John Harte. (2014) Beyond the species-area relationship: improving macroecological extinction estimates. Methods in Ecology and Evolution 5, 1-8.
Online publication date: 1-Jan-2014.
CrossRef
James H. Brown. (2014) Why are there so many species in the tropics?. Journal of Biogeography 41:10.1111/jbi.2013.41.issue-1, 8-22.
Online publication date: 1-Jan-2014.
CrossRef
Daniel C. Laughlin, David E. Laughlin. (2013) Advances in modeling trait-based plant community assembly. Trends in Plant Science 18, 584-593.
Online publication date: 1-Oct-2013.
CrossRef
Ricardo A. Rodríguez, Juan D. Delgado, Ada Ma. Herrera, Rodrigo Riera, Rafael Ma. Navarro, Carlos Melián, Lorenzo Dieguez, Ángel Quirós. (2013) Effects of two traits of the ecological state equation on our understanding of species coexistence and ecosystem services. Ecological Modelling 265, 1-13.
Online publication date: 1-Sep-2013.
CrossRef
Kenneth J. Locey, Ethan P. White. (2013) How species richness and total abundance constrain the distribution of abundance. Ecology Letters 16:10.1111/ele.2013.16.issue-9, 1177-1185.
Online publication date: 1-Sep-2013.
CrossRef
Kristin S. Shrader-Frechette. (2013) Biomass and Effects of Airborne Ultrafine Particulates: Lessons About State Variables in Ecology. Biological Theory 8, 44-48.
Online publication date: 1-Jul-2013.
CrossRef
James Rosindell, Stephen J. Cornell. (2013) Universal scaling of species-abundance distributions across multiple scales. Oikos 122:10.1111/more.2013.122.issue-7, 1101-1111.
Online publication date: 1-Jul-2013.
CrossRef
Amilcare Porporato, Ignacio Rodriguez-Iturbe. (2013) From random variability to ordered structures: a search for general synthesis in ecohydrology. Ecohydrology 6:10.1002/eco.v6.3, 333-342.
Online publication date: 1-Jun-2013.
CrossRef
Loïc Pellissier, Anahí Espíndola, Jean-Nicolas Pradervand, Anne Dubuis, Julien Pottier, Simon Ferrier, Antoine Guisan. (2013) A probabilistic approach to niche-based community models for spatial forecasts of assemblage properties and their uncertainties. Journal of Biogeography, n/a-n/a.
Online publication date: 1-Jun-2013.
CrossRef
H. Arthur Woods, J. Keaton Wilson. (2013) An information hypothesis for the evolution of homeostasis. Trends in Ecology & Evolution 28, 283-289.
Online publication date: 1-May-2013.
CrossRef
Jian D. L. Yen, James R. Thomson, Ralph Mac Nally. (2013) Is there an ecological basis for species abundance distributions?. Oecologia 171, 517-525.
Online publication date: 1-Feb-2013.
CrossRef
Keith R. Skene. (2013) The energetics of ecological succession: A logistic model of entropic output. Ecological Modelling 250, 287-293.
Online publication date: 1-Feb-2013.
CrossRef
Nick J. B. Isaac, David Storch, Chris Carbone. (2013) The paradox of energy equivalence. Global Ecology and Biogeography 22, 1-5.
Online publication date: 1-Jan-2013.
CrossRef
Daniel J. McGlinn, Xiao Xiao, Ethan P. White. (2013) An empirical evaluation of four variants of a universal species–area relationship. PeerJ 1, e212.
Online publication date: 1-Jan-2013.
CrossRef
Giorgio Sonnino, György Steinbrecher, Alessandro Cardinali, Alberto Sonnino, Mustapha Tlidi. (2013) Family of probability distributions derived from maximal entropy principle with scale invariant restrictions. Physical Review E 87.
Online publication date: 1-Jan-2013.
CrossRef
S. A. Keith, T. J. Webb, K. Bohning-Gaese, S. R. Connolly, N. K. Dulvy, F. Eigenbrod, K. E. Jones, T. Price, D. W. Redding, I. P. F. Owens, N. J. B. Isaac. (2012) What is macroecology?. Biology Letters 8, 904-906.
Online publication date: 23-Dec-2012.
CrossRef
S. R. Supp, X. Xiao, S. K. M. Ernest, E. P. White. (2012) An experimental test of the response of macroecological patterns to altered species interactions. Ecology 93:12, 2505-2511.
Online publication date: 1-Dec-201226-Dec-2012.
Abstract . Full Text . PDF (4668 KB) 
John Conlisk, Erin Conlisk, Abd. Rahman Kassim, Ian Billick, John Harte. (2012) The shape of a species' spatial abundance distribution. Global Ecology and Biogeography 21, 1167-1178.
Online publication date: 1-Dec-2012.
CrossRef
Han Xu, Shirong Liu, Yide Li, Runguo Zang, Fangliang He. (2012) Assessing non-parametric and area-based methods for estimating regional species richness. Journal of Vegetation Science 23:10.1111/jvs.2012.23.issue-6, 1006-1012.
Online publication date: 1-Dec-2012.
CrossRef
Brody Sandel, Jeffrey D. Corbin. (2012) Scale-dependent responses of species richness to experimental manipulation of productivity and disturbance in Californian coastal grasslands. Journal of Vegetation Science 23:10.1111/jvs.2012.23.issue-5, 906-918.
Online publication date: 1-Oct-2012.
CrossRef
P. Coquillard, A. Muzy, F. Diener. (2012) Optimal phenotypic plasticity in a stochastic environment minimises the cost/benefit ratio. Ecological Modelling 242, 28-36.
Online publication date: 1-Sep-2012.
CrossRef
Michael G. Bowler, Colleen K. Kelly. (2012) On the statistical mechanics of species abundance distributions. Theoretical Population Biology 82, 85-91.
Online publication date: 1-Sep-2012.
CrossRef
Ethan P. White, Katherine M. Thibault, Xiao Xiao. (2012) Characterizing species abundance distributions across taxa and ecosystems using a simple maximum entropy model. Ecology 93:8, 1772-1778.
Online publication date: 3-Aug-201225-Apr-2012.
Abstract . Full Text . PDF (2043 KB) 
Charles A. Price, Joshua S Weitz, Van M. Savage, James Stegen, Andrew Clarke, David A. Coomes, Peter S. Dodds, Rampal S. Etienne, Andrew J. Kerkhoff, Katherine McCulloh, Karl J. Niklas, Han Olff, Nathan G. Swenson. (2012) Testing the metabolic theory of ecology. Ecology Letters, n/a-n/a.
Online publication date: 1-Aug-2012.
CrossRef
Salvador Pueyo. (2012) Comparison of two views of maximum entropy in biodiversity: Frank (2011) and Pueyo et al. (2007). Ecology and Evolution 2, 988-993.
Online publication date: 1-May-2012.
CrossRef
2012. References. Metabolic Ecology, 309-360.
CrossRef
M. Convertino, G.A. Kiker, R. Muñoz-Carpena, M.L. Chu-Agor, R.A. Fischer, I. Linkov. (2011) Scale- and resolution-invariance of suitable geographic range for shorebird metapopulations. Ecological Complexity 8, 364-376.
Online publication date: 1-Dec-2011.
CrossRef
Xing Dingliang, Hao Zhanqing. (2011) The principle of maximum entropy and its applications in ecology. Biodiversity Science 19, 295-302.
Online publication date: 9-Nov-2011.
CrossRef
K. E. Jones, T. M. Blackburn, N. J. B. Isaac. (2011) Can unified theories of biodiversity explain mammalian macroecological patterns?. Philosophical Transactions of the Royal Society B: Biological Sciences 366, 2554-2563.
Online publication date: 12-Sep-2011.
CrossRef
Cory Merow, Andrew M. Latimer, John A. Silander, Jr.. (2011) Can entropy maximization use functional traits to explain species abundances? A comprehensive evaluation. Ecology 92:7, 1523-1537.
Online publication date: 1-Jul-201115-Jul-2011.
Abstract . Full Text . PDF (612 KB) 
William C. Dunn, Bruce T. Milne, Ricardo Mantilla, Vijay K. Gupta. (2011) Scaling relations between riparian vegetation and stream order in the Whitewater River network, Kansas, USA. Landscape Ecology.
Online publication date: 17-Jun-2011.
CrossRef
Colleen K. Kelly, Stephen J. Blundell, Michael G. Bowler, Gordon A. Fox, Paul H. Harvey, Mark R. Lomas, F. Ian Woodward. (2011) The statistical mechanics of community assembly and species distribution. New Phytologist, no-no.
Online publication date: 1-Apr-2011.
CrossRef
S. A. FRANK. (2011) Measurement scale in maximum entropy models of species abundance. Journal of Evolutionary Biology, no-no.
Online publication date: 1-Jan-2011.
CrossRef
Tommaso Zillio, Fangliang He. (2010) Modeling spatial aggregation of finite populations. Ecology 91:12, 3698-3706.
Online publication date: 1-Dec-201017-Dec-2010.
Abstract . Full Text . PDF (321 KB) 
Karel Mokany, Simon Ferrier. (2010) Predicting impacts of climate change on biodiversity: a role for semi-mechanistic community-level modelling. Diversity and Distributions, no-no.
Online publication date: 1-Dec-2010.
CrossRef
E. P. White, S. K. M. Ernest, P. B. Adler, A. H. Hurlbert, S. K. Lyons. (2010) Integrating spatial and temporal approaches to understanding species richness. Philosophical Transactions of the Royal Society B: Biological Sciences 365, 3633-3643.
Online publication date: 27-Nov-2010.
CrossRef
Charles A. Price, James F. Gilooly, Andrew P. Allen, Joshua S. Weitz, Karl J. Niklas. (2010) The metabolic theory of ecology: prospects and challenges for plant biology. New Phytologist 188, 696-710.
Online publication date: 1-Nov-2010.
CrossRef
Bill Shipley. (2010) Inferential permutation tests for maximum entropy models in ecology. Ecology 91:9, 2794-2805.
Online publication date: 1-Sep-20107-Sep-2010.
Abstract . Full Text . PDF (375 KB) 
Brian J. McGill. (2010) Towards a unification of unified theories of biodiversity. Ecology Letters 13, 627-642.
Online publication date: 1-May-2010.
CrossRef
Brian J. McGill, Jeffrey C. Nekola. (2010) Mechanisms in macroecology: AWOL or purloined letter? Towards a pragmatic view of mechanism. Oikos 119, 591-603.
Online publication date: 1-Apr-2010.
CrossRef
Adam B. Smith. (2010) Caution with curves: Caveats for using the species–area relationship in conservation. Biological Conservation 143, 555-564.
Online publication date: 1-Mar-2010.
CrossRef
Fangliang He. (2010) Maximum entropy, logistic regression, and species abundance. Oikos 119:10.1111/more.2009.119.issue-4, 578-582.
Online publication date: 1-Mar-2010.
CrossRef
Jayanth R Banavar, Amos Maritan, Igor Volkov. (2010) Applications of the principle of maximum entropy: from physics to ecology. Journal of Physics: Condensed Matter 22, 063101.
Online publication date: 17-Feb-2010.
CrossRef
S. Azaele, R. Muneepeerakul, A. Rinaldo, I. Rodriguez-Iturbe. (2010) Inferring plant ecosystem organization from species occurrences. Journal of Theoretical Biology 262, 323-329.
Online publication date: 21-Jan-2010.
CrossRef
Richard J. Williams. (2010) Simple MaxEnt models explain food web degree distributions. Theoretical Ecology 3:1, 45.
CrossRef
I. Volkov, J. R. Banavar, S. P. Hubbell, A. Maritan. (2009) Inferring species interactions in tropical forests. Proceedings of the National Academy of Sciences 106, 13854-13859.
Online publication date: 18-Aug-2009.
CrossRef
John Harte, Adam B. Smith, David Storch. (2009) Biodiversity scales from plots to biomes with a universal species-area curve. Ecology Letters 12:10.1111/ele.2009.12.issue-8, 789-797.
Online publication date: 1-Aug-2009.
CrossRef
Bart Haegeman, Michel Loreau. (2009) Trivial and non-trivial applications of entropy maximization in ecology: a reply to Shipley. Oikos 118:10.1111/oik.2009.118.issue-8, 1270-1278.
Online publication date: 1-Aug-2009.
CrossRef
Hélène Morlon, Ethan P. White, Rampal S. Etienne, Jessica L. Green, Annette Ostling, David Alonso, Brian J. Enquist, Fangliang He, Allen Hurlbert, Anne E. Magurran, Brian A. Maurer, Brian J. McGill, Han Olff, David Storch, Tommaso Zillio. (2009) Taking species abundance distributions beyond individuals. Ecology Letters 12:10.1111/ele.2009.12.issue-6, 488-501.
Online publication date: 1-Jun-2009.
CrossRef